MolNFT v1 · #140144 · protein

HBP35 of porphyromonas gingivalis

5Y1A · 35 kda hemin binding protein: “HBP35 of porphyromonas gingivalis”. X-ray diffraction, 3 pockets (best druggability 0.42). MolNFT v1 #140144 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Y1A
Type: protein
Length: 314 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 35 kda hemin binding protein
UniProt: Q8G962
Pockets: 3 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	35 kda hemin binding protein	protein	314	16% helix, 36% strand	Q8G962

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	164	0.42	0.74	27	empty
2	65	0.38	0.79	17	empty
3	64	0.32	0.75	20	empty

Compared structures

5Y1A · HBP35 of Porphyromonas gingivalis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8G962
Elsewhere: RCSB PDB 5Y1A · PDBe 5Y1A · UniProt Q8G962

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