MolNFT v1 · #140138 · protein
Crystal structure of lp-40/N44
5Y14: “Crystal structure of lp-40/N44”. X-ray diffraction, 1 pocket (best druggability 0.40). MolNFT v1 #140138 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y14
- Type
- protein
- Length
- 211 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N44; Lp-40
- UniProt
- Q1HMR5
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 4 distinct chains · 93% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, B, A | N44 | protein | 44 | 95% helix, 0% strand | Q1HMR5 |
| F | Lp-40 | protein | 27 | 93% helix, 0% strand | — |
| E | Lp-40 | protein | 26 | 92% helix, 0% strand | — |
| D | Lp-40 | protein | 26 | 92% helix, 0% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.40 | 0.79 | 18 | empty |
Interfaces
9 interfaces between chains.
- B–A · 860 Ų buried · 5 hydrogen bonds · protein-protein
- C–A · 803 Ų buried · 3 hydrogen bonds · protein-protein
- C–B · 780 Ų buried · 4 hydrogen bonds · protein-protein
- C–E · 752 Ų buried · 8 hydrogen bonds · protein-protein
- A–F · 708 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5Y14 · Crystal structure of LP-40/N44 · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1HMR5
- Elsewhere: RCSB PDB 5Y14 · PDBe 5Y14 · UniProt Q1HMR5
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