MolNFT v1 · #140134 · protein
Sftsv gn head domain
5Y10 · Membrane glycoprotein polyprotein: “Sftsv gn head domain”. X-ray diffraction, 2 ligands (NAG, MAN). MolNFT v1 #140134 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y10
- Type
- protein
- Length
- 318 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane glycoprotein polyprotein
- UniProt
- A0A1L2DAC8
- Ligands
- NAG, MAN
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Membrane glycoprotein polyprotein | protein | 318 | 22% helix, 30% strand | A0A1L2DAC8 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains C
- MAN · alpha-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 8 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 5Y10 · SFTSV Gn head domain · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1L2DAC8
- Elsewhere: RCSB PDB 5Y10 · PDBe 5Y10 · UniProt A0A1L2DAC8
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