MolNFT v1 · #140132 · protein
RVFV GN-AU
5Y0Y · Nsmgngc: “RVFV GN-AU”. X-ray diffraction, 1 ligand (AU), 4 pockets (best druggability 0.55). MolNFT v1 #140132 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y0Y
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nsmgngc
- UniProt
- H9BSP3
- Ligands
- AU
- Pockets
- 4 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nsmgngc | protein | 289 | 10% helix, 28% strand | H9BSP3 |
Ligands and binding sites
- AU · Gold ion · metal · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.55 | 0.85 | 15 | empty |
| 2 | 108 | 0.47 | 0.80 | 21 | empty |
| 3 | 132 | 0.44 | 0.76 | 17 | empty |
| 4 | 50 | 0.42 | 0.83 | 20 | empty |
Modifications
Observed in the structure: 9 disulfide (disulfide).
Compared structures
- 5Y0Y · RVFV GN-AU · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H9BSP3
- Elsewhere: RCSB PDB 5Y0Y · PDBe 5Y0Y · UniProt H9BSP3
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