MolNFT v1 · #140130 · protein
The structure of rvfv gn head domain
5Y0W · Nsmgngc: “The structure of rvfv gn head domain”. X-ray diffraction, 3 pockets (best druggability 0.55). MolNFT v1 #140130 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y0W
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nsmgngc
- UniProt
- H9BSP3
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nsmgngc | protein | 316 | 12% helix, 29% strand | H9BSP3 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 135 | 0.55 | 0.81 | 16 | empty |
| 2 | 81 | 0.43 | 0.80 | 16 | empty |
| 3 | 85 | 0.41 | 0.78 | 18 | empty |
Modifications
Observed in the structure: 9 disulfide (disulfide).
Compared structures
- 5Y0W · The structure of RVFV Gn head domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H9BSP3
- Elsewhere: RCSB PDB 5Y0W · PDBe 5Y0W · UniProt H9BSP3
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