MolNFT v1 · #140125 · protein
Crystal structure of thermotoga maritima tmcal (apo, form I)
5Y0R · TMTMCAL(SEMET): “Crystal structure of thermotoga maritima tmcal (apo, form I)”. X-ray diffraction, 2 pockets (best druggability 0.81). MolNFT v1 #140125 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y0R
- Type
- protein
- Length
- 423 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TMTMCAL(SEMET)
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TMTMCAL(SEMET) | protein | 423 | 56% helix, 10% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 864 | 0.81 | 0.83 | 80 | empty |
| 2 | 74 | 0.31 | 0.74 | 16 | empty |
Modifications
Observed in the structure: 12 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 5Y0R · Crystal structure of Thermotoga maritima TmcAL (apo, form I) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5Y0R · PDBe 5Y0R
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