MolNFT v1 · #140085 · protein
Vitamin D receptor with a synthetic ligand ADRO2
5XZH: “Vitamin D receptor with a synthetic ligand ADRO2”. X-ray diffraction, 1 ligand (8J3). MolNFT v1 #140085 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XZH
- Type
- protein
- Length
- 250 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P13053, Q15648
- Ligands
- 8J3
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 239 | — | P13053 |
| C | — | protein | 11 | — | Q15648 |
Ligands and binding sites
- 8J3 · (1R,3S,5Z)-5-[(2E)-2-[(1r,3as,7ar)-1-[(2R,6R)-6-(1-adamantyl)-6-oxidanyl-hex-4-yn-2-yl]-7A-methyl-2,3,3A, 5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XZH · Vitamin D receptor with a synthetic ligand ADRO2 · the same entry in another collection · chain A against A, TM-score 1.00
- Q15648 · AlphaFold monomer V2.0 prediction for mediator of RNA polymerase II transcription subunit… · a predicted model of the same protein · chain C against A, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13053
- Every structure of UniProt Q15648
- Elsewhere: RCSB PDB 5XZH · PDBe 5XZH · UniProt P13053 · UniProt Q15648
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