MolNFT v1 · #140064 · protein
Crystal structure of drosophila simulans rhino chromoshadow domain in complex with N-terminal domain
5XYW: “Crystal structure of drosophila simulans rhino chromoshadow domain in complex with N-terminal domain”. X-ray diffraction, 1 pocket (best druggability 0.49). MolNFT v1 #140064 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5XYW
- Type
- protein
- Length
- 171 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rhino; GD21652
- UniProt
- Q49BI5, B4Q3Z0
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 4 distinct chains · 53% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhino | protein | 54 | 30% helix, 39% strand | Q49BI5 |
| B | Rhino | protein | 42 | 36% helix, 40% strand | Q49BI5 |
| C | GD21652 | protein | 41 | 80% helix, 0% strand | B4Q3Z0 |
| D | GD21652 | protein | 34 | 79% helix, 0% strand | B4Q3Z0 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 164 | 0.49 | 0.77 | 19 | empty |
Interfaces
5 interfaces between chains.
- A–C · 724 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 631 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 517 Ų buried · 1 hydrogen bond · protein-protein
- C–D · 321 Ų buried · 5 hydrogen bonds · protein-protein
- A–D · 135 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5XYW · Crystal structure of drosophila simulans Rhino chromoshadow domain in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q49BI5
- Every structure of UniProt B4Q3Z0
- Elsewhere: RCSB PDB 5XYW · PDBe 5XYW · UniProt Q49BI5 · UniProt B4Q3Z0
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