MolNFT v1 · #140048 · protein
Structure of 6-aminohexanoate-oligomer hydrolase from arthrobacter sp. KI72.
5XYG · Endotype 6-aminohexanoat-oligomer hydrolase: “Structure of 6-aminohexanoate-oligomer hydrolase from arthrobacter sp. KI72.”. X-ray diffraction, 2 ligands (CL, SO4), 4 pockets (best druggability 0.73). MolNFT v1 #140048 on GenesisL1…
- PDB
- 5XYG
- Type
- protein
- Length
- 662 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endotype 6-aminohexanoat-oligomer hydrolase
- Ligands
- CL, SO4
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endotype 6-aminohexanoat-oligomer hydrolase | protein | 323 | 26% helix, 35% strand | — |
| B | Endotype 6-aminohexanoat-oligomer hydrolase | protein | 339 | 26% helix, 32% strand | — |
Ligands and binding sites
- CL · Chloride ion · ion · 5 copies · chains A, B
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 754 | 0.73 | 0.78 | 101 | GOL, CL |
| 2 | 151 | 0.42 | 0.75 | 25 | empty |
| 3 | 78 | 0.41 | 0.79 | 21 | empty |
| 4 | 72 | 0.29 | 0.72 | 18 | CL |
Interfaces
1 interface between chains.
- A–B · 1015 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5XYG · Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5XYG · PDBe 5XYG
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.