MolNFT v1 · #140046 · protein
Crystal structure of aimr from bacillus phage spbeta
5XYB · Aimr transcriptional regulator: “Crystal structure of aimr from bacillus phage spbeta”. X-ray diffraction, 6 pockets (best druggability 0.77). MolNFT v1 #140046 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XYB
- Type
- protein
- Length
- 698 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aimr transcriptional regulator
- UniProt
- O64094
- Pockets
- 6 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aimr transcriptional regulator | protein | 348 | 73% helix, 0% strand | O64094 |
| B | Aimr transcriptional regulator | protein | 350 | 71% helix, 0% strand | O64094 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 824 | 0.77 | 0.81 | 55 | empty |
| 2 | 742 | 0.73 | 0.78 | 48 | empty |
| 3 | 84 | 0.36 | 0.75 | 18 | empty |
| 4 | 53 | 0.35 | 0.79 | 13 | empty |
| 5 | 55 | 0.30 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 838 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5XYB · Crystal structure of AimR from Bacillus phage SPbeta · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O64094
- Elsewhere: RCSB PDB 5XYB · PDBe 5XYB · UniProt O64094
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