MolNFT v1 · #140018 · protein
Beta-1,4-mannanase-semet-RMMAN134A
5XXA · Endo-1,4-beta-mannanase: “Beta-1,4-mannanase-semet-RMMAN134A”. X-ray diffraction, 3 pockets (best druggability 0.50). MolNFT v1 #140018 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XXA
- Type
- protein
- Length
- 308 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-mannanase
- UniProt
- A0A0A1NDE2
- Pockets
- 3 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Endo-1,4-beta-mannanase | protein | 154 | 64% helix, 6% strand | A0A0A1NDE2 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 251 | 0.50 | 0.74 | 37 | empty |
| 2 | 69 | 0.41 | 0.80 | 17 | empty |
| 3 | 52 | 0.29 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 625 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5XXA · beta-1,4-mannanase-SeMet-RmMan134A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A1NDE2
- Elsewhere: RCSB PDB 5XXA · PDBe 5XXA · UniProt A0A0A1NDE2
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