MolNFT v1 · #139964 · protein + DNA
E. fae CAS1-CAS2/PRESPACER/TARGET ternary complex revealing DNA sampling and half-integration states
5XVO: “E. fae CAS1-CAS2/PRESPACER/TARGET ternary complex revealing DNA sampling and half-integration states”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #139964 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XVO
- Type
- protein + DNA
- Length
- 2,912 residues
- Chains
- 18
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E6GPD7, E6GPD6
- Ligands
- MG
Structure
x-ray diffraction · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, L | — | protein | 288 | — | E6GPD7 |
| C | — | protein | 286 | — | E6GPD7 |
| D, J | — | protein | 287 | — | E6GPD7 |
| E | — | protein | 106 | — | E6GPD6 |
| F, N | — | protein | 105 | — | E6GPD6 |
| G | — | dna | 25 | — | — |
| H | — | dna | 5 | — | — |
| I, K | — | protein | 285 | — | E6GPD7 |
| M | — | protein | 104 | — | E6GPD6 |
| O, P | — | dna | 27 | — | — |
| Q | — | dna | 46 | — | — |
| R | — | dna | 68 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains E, F, R, G, M, N, P, O
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XVO · E. fae Cas1-Cas2/prespacer/target ternary complex revealing DNA sampling and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E6GPD7
- Every structure of UniProt E6GPD6
- Elsewhere: RCSB PDB 5XVO · PDBe 5XVO · UniProt E6GPD7 · UniProt E6GPD6
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