MolNFT v1 · #139867 · protein
The catalytic domain of gdpp with 5'-papa
5XSP: “The catalytic domain of gdpp with 5'-papa”. X-ray diffraction, 2 ligands (A, MN). MolNFT v1 #139867 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XSP
- Type
- protein
- Length
- 663 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0U1MUE2
- Ligands
- A, MN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 332 | — | A0A0U1MUE2 |
| B | — | protein | 331 | — | A0A0U1MUE2 |
Ligands and binding sites
- A · Adenosine-5'-monophosphate · ligand · 4 copies · chains A, B
- MN · Manganese (II) ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XSP · The catalytic domain of GdpP with 5'-pApA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0U1MUE2
- Elsewhere: RCSB PDB 5XSP · PDBe 5XSP · UniProt A0A0U1MUE2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.