MolNFT v1 · #139738 · protein + DNA + RNA
RNA polymerase II elongation complex bound with SPT4/5 and tfiis
5XON: “RNA polymerase II elongation complex bound with SPT4/5 and tfiis”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #139738 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XON
- Type
- protein + DNA + RNA
- Length
- 4,648 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, C4QY79, C4R009, C4R3Z5, C4QWA8, C4R2R6, C4R0E6, C4R370
- Ligands
- ZN, MG
Structure
electron microscopy · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1427 | — | C4R4Y0 |
| B | — | protein | 1161 | — | C4QZQ7 |
| C | — | protein | 263 | — | C4R7L2 |
| D | — | protein | 168 | — | C4R2U9 |
| E | — | protein | 213 | — | C4R3P8 |
| F | — | protein | 84 | — | C4R1V1 |
| G | — | protein | 171 | — | C4R9A1 |
| H | — | protein | 133 | — | C4R273 |
| I | — | protein | 111 | — | C4QY79 |
| J | — | protein | 66 | — | C4R009 |
| K | — | protein | 113 | — | C4R3Z5 |
| L | — | protein | 45 | — | C4QWA8 |
| P | — | rna | 16 | — | — |
| T | — | dna | 48 | — | — |
| N | — | dna | 43 | — | — |
| U | — | protein | 155 | — | C4R2R6 |
| V | — | protein | 102 | — | C4R0E6 |
| W | — | protein | 329 | — | C4R370 |
Ligands and binding sites
- ZN · Zinc ion · metal · 10 copies · chains A, B, C, I, J, L, U, V
- MG · Magnesium ion · metal · chains A, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XON · RNA Polymerase II elongation complex bound with Spt4/5 and TFIIS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4R4Y0
- Every structure of UniProt C4QZQ7
- Every structure of UniProt C4R7L2
- Every structure of UniProt C4R2U9
- Every structure of UniProt C4R3P8
- Every structure of UniProt C4R1V1
- Every structure of UniProt C4R9A1
- Every structure of UniProt C4R273
- Every structure of UniProt C4QY79
- Every structure of UniProt C4R009
- Every structure of UniProt C4R3Z5
- Every structure of UniProt C4QWA8
- Every structure of UniProt C4R2R6
- Every structure of UniProt C4R0E6
- Every structure of UniProt C4R370
- Elsewhere: RCSB PDB 5XON · PDBe 5XON · UniProt C4R4Y0 · UniProt C4QZQ7 · UniProt C4R7L2 · UniProt C4R2U9 · UniProt C4R3P8 · UniProt C4R1V1 · UniProt C4R9A1 · UniProt C4R273 · UniProt C4QY79 · UniProt C4R009 · UniProt C4R3Z5 · UniProt C4QWA8 · UniProt C4R2R6 · UniProt C4R0E6 · UniProt C4R370
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