MolNFT v1 · #139714 · protein

Crystal structure of cred complex with fumarate

5XNZ: “Crystal structure of cred complex with fumarate”. X-ray diffraction, 1 ligand (FUM), 1 pocket (best druggability 0.57). MolNFT v1 #139714 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XNZ
Type: protein
Length: 439 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cred
UniProt: A0A0K2JL82
Ligands: FUM
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cred	protein	439	67% helix, 4% strand	A0A0K2JL82

Ligands and binding sites

FUM · Fumaric acid · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	175	0.57	0.80	15	empty

Compared structures

5XNZ · Crystal structure of CreD complex with fumarate · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0K2JL82
Elsewhere: RCSB PDB 5XNZ · PDBe 5XNZ · UniProt A0A0K2JL82

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