MolNFT v1 · #139685 · protein

Homo-dimer crystal structure of geranylgeranyl diphosphate synthases 1 from oryza sativa

5XN5 · OS07G0580900 protein: “Homo-dimer crystal structure of geranylgeranyl diphosphate synthases 1 from oryza sativa”. X-ray diffraction, 9 pockets (best druggability 0.70). MolNFT v1 #139685 on GenesisL1: 3D structure, binding sites and…

PDB: 5XN5
Type: protein
Length: 569 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: OS07G0580900 protein
UniProt: Q7XI92
Pockets: 9 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 73% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	OS07G0580900 protein	protein	288	73% helix, 1% strand	Q7XI92
B	OS07G0580900 protein	protein	281	73% helix, 1% strand	Q7XI92

Pockets

9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.70	0.96	18	empty
2	507	0.68	0.79	50	empty
3	468	0.66	0.78	46	empty
4	58	0.45	0.83	18	empty
5	56	0.38	0.80	19	empty

Interfaces

1 interface between chains.

A–B · 1823 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

5XN5 · Homo-dimer crystal structure of geranylgeranyl diphosphate synthases 1 from Oryza sativa · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7XI92
Elsewhere: RCSB PDB 5XN5 · PDBe 5XN5 · UniProt Q7XI92

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