MolNFT v1 · #139676 · protein
Selenomethionine-derivated zhd
5XMW · Zearalenone lactonase: “Selenomethionine-derivated zhd”. X-ray diffraction, 2 pockets (best druggability 0.73). MolNFT v1 #139676 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XMW
- Type
- protein
- Length
- 538 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Zearalenone lactonase
- UniProt
- A0A0N9XBU7
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Zearalenone lactonase | protein | 270 | 47% helix, 18% strand | A0A0N9XBU7 |
| B | Zearalenone lactonase | protein | 268 | 49% helix, 18% strand | A0A0N9XBU7 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 287 | 0.73 | 0.86 | 34 | empty |
| 2 | 255 | 0.72 | 0.86 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 658 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 5XMW · Selenomethionine-derivated ZHD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0N9XBU7
- Elsewhere: RCSB PDB 5XMW · PDBe 5XMW · UniProt A0A0N9XBU7
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