MolNFT v1 · #13966 · protein
Accelerated X-ray structure elucidation of a 36 kda MURAMIDASE/TRANSGLYCOSYLASE using warp
1LTM · 36 kda soluble lytic transglycosylase: “Accelerated X-ray structure elucidation of a 36 kda MURAMIDASE/TRANSGLYCOSYLASE using warp”. X-ray diffraction, 2 ligands (BCN, NA), 2 pockets (best druggability 0.48). MolNFT v1 #13966 on…
- PDB
- 1LTM
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 36 kda soluble lytic transglycosylase
- EC
- 3.2.1.-
- UniProt
- P41052
- Ligands
- BCN, NA
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 36 kda soluble lytic transglycosylase (EC 3.2.1.-) | protein | 309 | 50% helix, 11% strand | P41052 |
Ligands and binding sites
- BCN · Bicine · ligand · chains A
- NA · Sodium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 244 | 0.48 | 0.73 | 33 | BCN, EDO |
| 2 | 51 | 0.25 | 0.73 | 18 | empty |
Compared structures
- 1LTM · Accelerated X-ray structure elucidation of a 36 kda MURAMIDASE/TRANSGLYCOSYLASE using warp · the same entry in another collection · chain A against A, TM-score 1.00
- P41052 · AlphaFold monomer V2.0 prediction for membrane-bound lytic murein transglycosylase B… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41052
- Elsewhere: RCSB PDB 1LTM · PDBe 1LTM · UniProt P41052
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.