MolNFT v1 · #139578 · DNA

Structure of 8-mer DNA3

5XK1 · DNA (5'-D(*GP*GP*AP*GP*CP*CP*CP*C)-3'): “Structure of 8-mer DNA3”. X-ray diffraction. MolNFT v1 #139578 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XK1
Type: DNA
Length: 16 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*GP*GP*AP*GP*CP*CP*CP*C)-3')

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	DNA (5'-D(GPGPAPGPCPCPCPC)-3')	dna	8	—	—

Interfaces

1 interface between chains.

A–C · 379 Å² buried · 36 hydrogen bonds · nucleic-nucleic

Compared structures

5XK1 · Structure of 8-mer DNA3 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5XK1 · PDBe 5XK1

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