MolNFT v1 · #139545 · protein + RNA

Structure of sprlmcd with U747 RNA

5XJ2: “Structure of sprlmcd with U747 RNA”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #139545 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XJ2
Type: protein + RNA
Length: 1,823 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q97R12
Ligands: ZN

Structure

x-ray diffraction · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	455	—	Q97R12
B	—	protein	453	—	Q97R12
C	—	protein	452	—	Q97R12
D	—	protein	453	—	Q97R12
G	—	rna	10	—	—

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5XJ2 · Structure of spRlmCD with U747 RNA · the same entry in another collection · chain G against G, TM-score 1.00
Q97R12 · AlphaFold monomer V2.0 prediction for uncharacterized RNA methyltransferase SP_1029… · a predicted model of the same protein · chain C against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97R12
Elsewhere: RCSB PDB 5XJ2 · PDBe 5XJ2 · UniProt Q97R12

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