MolNFT v1 · #139509 · protein

BRD4 bound with compound BDI1

5XHY · Bromodomain-containing protein 4: “BRD4 bound with compound BDI1”. X-ray diffraction, 1 ligand (8FC), 1 pocket (best druggability 0.54). MolNFT v1 #139509 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XHY
Type: protein
Length: 124 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bromodomain-containing protein 4
UniProt: O60885
Ligands: 8FC
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bromodomain-containing protein 4	protein	124	53% helix, 0% strand	O60885

Ligands and binding sites

8FC · ~{N}-(4-cyclopropyl-1,3,3-trimethyl-2-oxidanylidene-quinoxalin-6-yl)-4-methyl-benzenesulfonamide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	108	0.54	0.83	18	8FC

Compared structures

5XHY · BRD4 bound with compound Bdi1 · the same entry in another collection · chain A against A, TM-score 1.00
O60885 · AlphaFold monomer V2.0 prediction for bromodomain-containing protein 4 (O60885) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O60885
Elsewhere: RCSB PDB 5XHY · PDBe 5XHY · UniProt O60885

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