MolNFT v1 · #139501 · protein
Apolipoprotein N-acyl transferase
5XHQ · Apolipoprotein N-acyltransferase: “Apolipoprotein N-acyl transferase”. X-ray diffraction, 9 pockets (best druggability 0.80). MolNFT v1 #139501 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XHQ
- Type
- protein
- Length
- 978 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apolipoprotein N-acyltransferase
- EC
- 2.3.1.-
- UniProt
- P23930
- Pockets
- 9 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 50% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apolipoprotein N-acyltransferase (EC 2.3.1.-) | protein | 488 | 50% helix, 17% strand | P23930 |
| B | Apolipoprotein N-acyltransferase (EC 2.3.1.-) | protein | 490 | 50% helix, 17% strand | P23930 |
Ligands and binding sites
- HTG · heptyl 1-thio-beta-D-glucopyranoside · additive · 6 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 735 | 0.80 | 0.83 | 57 | empty |
| 2 | 796 | 0.80 | 0.82 | 61 | empty |
| 3 | 490 | 0.70 | 0.80 | 39 | HTG |
| 4 | 201 | 0.63 | 0.83 | 25 | empty |
| 5 | 188 | 0.57 | 0.80 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 344 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23930
- Elsewhere: RCSB PDB 5XHQ · PDBe 5XHQ · UniProt P23930
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