MolNFT v1 · #139484 · protein

Aspergillus kawachii beta-fructofuranosidase complexed with glycerol

5XH8 · Extracellular invertase: “Aspergillus kawachii beta-fructofuranosidase complexed with glycerol”. X-ray diffraction, 1 ligand (NA), 6 pockets (best druggability 0.74). MolNFT v1 #139484 on GenesisL1: 3D structure, binding sites and…

PDB: 5XH8
Type: protein
Length: 605 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Extracellular invertase
UniProt: G7XM46
Ligands: NA
Pockets: 6 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Extracellular invertase	protein	605	7% helix, 45% strand	G7XM46

Ligands and binding sites

NA · Sodium ion · metal · chains A
GOL · Glycerol · additive · 6 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.74	0.99	16	empty
2	442	0.68	0.80	35	GOL
3	164	0.51	0.78	26	empty
4	103	0.36	0.74	24	ACT
5	88	0.36	0.75	24	GOL

Compared structures

5XH8 · Aspergillus kawachii beta-fructofuranosidase complexed with glycerol · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G7XM46
Elsewhere: RCSB PDB 5XH8 · PDBe 5XH8 · UniProt G7XM46

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