MolNFT v1 · #139473 · protein
Crystal structure of the N-terminal domain of staphylococcus aureus single-stranded DNA-binding protein ssba at 1.82 ångström resolution
5XGT: “Crystal structure of the N-terminal domain of staphylococcus aureus single-stranded DNA-binding protein ssba…”. X-ray diffraction, 3 pockets (best druggability 0.39). MolNFT v1 #139473 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5XGT
- Type
- protein
- Length
- 209 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single-stranded DNA-binding protein
- UniProt
- A0A0D1JHQ1
- Pockets
- 3 · best druggability 0.39
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Single-stranded DNA-binding protein | protein | 104 | 8% helix, 58% strand | A0A0D1JHQ1 |
| B | Single-stranded DNA-binding protein | protein | 105 | 10% helix, 57% strand | A0A0D1JHQ1 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.39 | 0.74 | 21 | empty |
| 2 | 115 | 0.38 | 0.74 | 27 | GOL |
| 3 | 85 | 0.38 | 0.77 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1256 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 5XGT · Crystal structure of the N-terminal domain of Staphylococcus aureus single-stranded… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D1JHQ1
- Elsewhere: RCSB PDB 5XGT · PDBe 5XGT · UniProt A0A0D1JHQ1
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