MolNFT v1 · #139432 · protein

Crystal structure of the force-sensing device region of alpha N- catenin

5XFL · Catenin alpha-2: “Crystal structure of the force-sensing device region of alpha N- catenin”. X-ray diffraction, 16 pockets (best druggability 0.77). MolNFT v1 #139432 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XFL
Type: protein
Length: 1,425 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Catenin alpha-2
UniProt: Q61301
Pockets: 16 · best druggability 0.77

Structure

x-ray diffraction · 4 distinct chains · 82% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Catenin alpha-2	protein	354	82% helix, 0% strand	Q61301
B	Catenin alpha-2	protein	356	83% helix, 0% strand	Q61301
C	Catenin alpha-2	protein	359	82% helix, 0% strand	Q61301
D	Catenin alpha-2	protein	356	81% helix, 0% strand	Q61301

Pockets

16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.77	0.97	17	empty
2	86	0.77	0.98	16	empty
3	584	0.73	0.81	56	empty
4	596	0.66	0.77	48	empty
5	582	0.64	0.76	59	empty

Interfaces

3 interfaces between chains.

A–C · 1349 Å² buried · 37 hydrogen bonds · protein-protein
B–D · 1320 Å² buried · 35 hydrogen bonds · protein-protein
A–B · 807 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

5XFL · Crystal structure of the force-sensing device region of alpha N-catenin · the same entry in another collection · chain D against D, TM-score 1.00
Q61301 · AlphaFold monomer V2.0 prediction for catenin alpha-2 (Q61301) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q61301
Elsewhere: RCSB PDB 5XFL · PDBe 5XFL · UniProt Q61301

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