MolNFT v1 · #139427 · protein

Luciferin-regenerating enzyme solved by sad using xfel (refined against 11,000 patterns)

5XFE · Luciferin regenerating enzyme: “Luciferin-regenerating enzyme solved by sad using xfel (refined against 11,000 patterns)”. X-ray diffraction, 2 ligands (HG, MG), 3 pockets (best druggability 0.72). MolNFT v1 #139427 on GenesisL1: 3D…

PDB: 5XFE
Type: protein
Length: 306 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Luciferin regenerating enzyme
UniProt: Q95YI4
Ligands: HG, MG
Pockets: 3 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Luciferin regenerating enzyme	protein	306	5% helix, 51% strand	Q95YI4

Ligands and binding sites

HG · Mercury (II) ion · metal · 2 copies · chains A
MG · Magnesium ion · metal · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	179	0.72	0.90	30	empty
2	277	0.65	0.81	30	MPD
3	53	0.31	0.76	17	empty

Compared structures

5XFE · Luciferin-regenerating enzyme solved by SAD using XFEL (refined against 11,000 patterns) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q95YI4
Elsewhere: RCSB PDB 5XFE · PDBe 5XFE · UniProt Q95YI4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.