MolNFT v1 · #139360 · protein
Crystal structure of tertiary complex of tdsc from paenibacillus sp. A11-2 with FMN and dibenzothiophene
5XDE: “Crystal structure of tertiary complex of tdsc from paenibacillus sp. A11-2 with FMN and dibenzothiophene”. X-ray diffraction, 3 ligands (FMN, 83R, SO4). MolNFT v1 #139360 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XDE
- Type
- protein
- Length
- 1,600 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9LBX2
- Ligands
- FMN, 83R, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 400 | — | Q9LBX2 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 4 copies · chains A, B, C, D
- 83R · dibenzothiophene · ligand · 3 copies · chains B, C, D
- SO4 · Sulfate ion · ion · 5 copies · chains A, B, C, D
- GOL · Glycerol · additive · 3 copies · chains B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XDE · Crystal structure of tertiary complex of TdsC from Paenibacillus sp. A11-2 with FMN and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LBX2
- Elsewhere: RCSB PDB 5XDE · PDBe 5XDE · UniProt Q9LBX2
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