MolNFT v1 · #13933 · protein

Crystal structure of the thrombospondin-1 type 1 repeats

1LSL · Thrombospondin 1: “Crystal structure of the thrombospondin-1 type 1 repeats”. X-ray diffraction, 2 ligands (FUL, FUC). MolNFT v1 #13933 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1LSL
Type: protein
Length: 113 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thrombospondin 1
UniProt: P07996
Ligands: FUL, FUC

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thrombospondin 1	protein	113	0% helix, 25% strand	P07996

Ligands and binding sites

FUL · beta-L-fucopyranose · sugar · chains A
FUC · alpha-L-fucopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 6 disulfide, 2 glycan (disulfide, O-glycosylation).

Compared structures

1LSL · Crystal Structure of the Thrombospondin-1 Type 1 Repeats · the same entry in another collection · chain A against A, TM-score 1.00
P07996 · AlphaFold monomer V2.0 prediction for thrombospondin-1 (P07996) · a predicted model of the same protein · chain A against A, TM-score 0.46

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07996
Elsewhere: RCSB PDB 1LSL · PDBe 1LSL · UniProt P07996

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