MolNFT v1 · #139328 · protein
X-ray structure of clostridium perfringens pili protein cppa
5XCC · Probable surface protein: “X-ray structure of clostridium perfringens pili protein cppa”. X-ray diffraction, 10 pockets (best druggability 0.63). MolNFT v1 #139328 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XCC
- Type
- protein
- Length
- 908 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable surface protein
- UniProt
- Q8XP10
- Pockets
- 10 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Probable surface protein | protein | 454 | 7% helix, 46% strand | Q8XP10 |
Pockets
10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 404 | 0.63 | 0.78 | 46 | empty |
| 2 | 342 | 0.62 | 0.79 | 52 | empty |
| 3 | 71 | 0.44 | 0.81 | 23 | empty |
| 4 | 84 | 0.35 | 0.74 | 16 | empty |
| 5 | 80 | 0.34 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 898 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 isopeptide (isopeptide).
Compared structures
- 5XCC · X-ray structure of Clostridium perfringens pili protein CppA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8XP10
- Elsewhere: RCSB PDB 5XCC · PDBe 5XCC · UniProt Q8XP10
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