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MolNFT v1 · #139260 · protein

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2-alf-(tg) crystals of P21212 symmetry

5XAA: “Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in…”. X-ray diffraction, 5 ligands (PCW, ACE, ALF). MolNFT v1 #139260 on GenesisL1: 3D structure, binding sites and pockets in…

PDB
5XAA
Type
protein
Length
994 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P04191
Ligands
PCW, ACE, ALF, TG1, MG

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein994—P04191

Ligands and binding sites

  • PCW · 1,2-dioleoyl-sn-glycero-3-phosphocholine · ligand · 33 copies · chains A
  • ACE · Acetyl group · ligand · chains A
  • ALF · Tetrafluoroaluminate ion · ligand · chains A
  • TG1 · Octanoic acid [3S-[3alpha, 3abeta, 4alpha, 6beta, 6abeta, 7beta, 8alpha(z), 9balpha]]-6-(acetyloxy)-2,3, -3A,4,5,6,6A,7,8,9B-decahydro-3,3A-dihydroxy-3,6,9-trimethyl-8-[(2-methyl-1-oxo-2-butenyl)oxy]-2-oxo-4-(1-oxobutoxy)-azuleno[4,5-b]furan-7-yl ester · ligand · chains A
  • MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5XAA · Complete structure factors and an atomic model of the calcium pump (SERCA1A) and… · the same entry in another collection · chain A against A, TM-score 1.00
  • P04191 · AlphaFold monomer V2.0 prediction for SARCOPLASMIC/ENDOPLASMIC reticulum calcium ATPase 1… · a predicted model of the same protein · chain A against A, TM-score 0.93

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