MolNFT v1 · #139240 · protein
Crystal structure of the BCL6 btb domain in complex with compound 5
5X9P · B-cell lymphoma 6 protein: “Crystal structure of the BCL6 btb domain in complex with compound 5”. X-ray diffraction, 1 ligand (80L). MolNFT v1 #139240 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X9P
- Type
- protein
- Length
- 131 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- B-cell lymphoma 6 protein
- UniProt
- P41182
- Ligands
- 80L
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | B-cell lymphoma 6 protein | protein | 131 | 53% helix, 16% strand | P41182 |
Ligands and binding sites
- 80L · 3-[[4-chloranyl-2-nitro-5-[(2-oxidanylidene-1,3-dihydrobenzimidazol-5-yl)amino]phenyl]amino]propanoic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5X9P · Crystal structure of the BCL6 BTB domain in complex with Compound 5 · the same entry in another collection · chain A against A, TM-score 1.00
- P41182 · AlphaFold monomer V2.0 prediction for B-cell lymphoma 6 protein (P41182) · a predicted model of the same protein · chain A against A, TM-score 0.32
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41182
- Elsewhere: RCSB PDB 5X9P · PDBe 5X9P · UniProt P41182
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