MolNFT v1 · #139189 · protein
Trehalose synthase from thermobaculum terrenum
5X7U: “Trehalose synthase from thermobaculum terrenum”. X-ray diffraction, 1 ligand (MG), 5 pockets (best druggability 0.80). MolNFT v1 #139189 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X7U
- Type
- protein
- Length
- 546 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trehalose synthase
- UniProt
- D1CE96
- Ligands
- MG
- Pockets
- 5 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trehalose synthase | protein | 546 | 34% helix, 19% strand | D1CE96 |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 149 | 0.80 | 0.97 | 38 | TRS |
| 2 | 119 | 0.61 | 0.86 | 23 | empty |
| 3 | 158 | 0.52 | 0.79 | 24 | empty |
| 4 | 65 | 0.33 | 0.76 | 16 | empty |
| 5 | 54 | 0.31 | 0.76 | 14 | empty |
Compared structures
- 5X7U · Trehalose synthase from Thermobaculum terrenum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1CE96
- Elsewhere: RCSB PDB 5X7U · PDBe 5X7U · UniProt D1CE96
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.