MolNFT v1 · #139180 · protein
Crystal structure of the nucleotide-binding domain (nbd) of lipb, a ABC transporter subunit of a type I secretion system
5X7K · Lipase B: “Crystal structure of the nucleotide-binding domain (nbd) of lipb, a ABC transporter subunit of a type I…”. X-ray diffraction, 2 pockets (best druggability 0.73). MolNFT v1 #139180 on GenesisL1: 3D structure, binding sites…
- PDB
- 5X7K
- Type
- protein
- Length
- 464 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipase B
- UniProt
- Q54456
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipase B | protein | 237 | 37% helix, 25% strand | Q54456 |
| B | Lipase B | protein | 227 | 33% helix, 26% strand | Q54456 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 681 | 0.73 | 0.79 | 69 | empty |
| 2 | 194 | 0.54 | 0.78 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 599 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5X7K · Crystal structure of the nucleotide-binding domain (NBD) of LipB, a ABC transporter… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q54456
- Elsewhere: RCSB PDB 5X7K · PDBe 5X7K · UniProt Q54456
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.