MolNFT v1 · #139131 · protein

Crystal structure of pseudorabies virus glycoprotein D

5X5V · Gd: “Crystal structure of pseudorabies virus glycoprotein D”. X-ray diffraction, 2 pockets (best druggability 0.50). MolNFT v1 #139131 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5X5V
Type: protein
Length: 236 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gd
UniProt: G3G933
Pockets: 2 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gd	protein	236	19% helix, 31% strand	G3G933

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	243	0.50	0.74	35	empty
2	76	0.33	0.75	16	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

5X5V · Crystal structure of pseudorabies virus glycoprotein D · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G3G933
Elsewhere: RCSB PDB 5X5V · PDBe 5X5V · UniProt G3G933

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