MolNFT v1 · #139127 · protein
Crystal structure of a hydrolase from listeria innocua
5X5R · LIN2189 protein: “Crystal structure of a hydrolase from listeria innocua”. X-ray diffraction, 3 pockets (best druggability 0.52). MolNFT v1 #139127 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X5R
- Type
- protein
- Length
- 385 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LIN2189 protein
- UniProt
- Q929T5
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LIN2189 protein | protein | 197 | 36% helix, 32% strand | Q929T5 |
| B | LIN2189 protein | protein | 188 | 32% helix, 32% strand | Q929T5 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 248 | 0.52 | 0.75 | 28 | empty |
| 2 | 117 | 0.46 | 0.79 | 20 | empty |
| 3 | 179 | 0.46 | 0.74 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 227 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5X5R · Crystal structure of a hydrolase from Listeria innocua · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q929T5
- Elsewhere: RCSB PDB 5X5R · PDBe 5X5R · UniProt Q929T5
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