MolNFT v1 · #139045 · protein

Pseudoazurin from alcaligenes faecalis (space group P65)

5X31: “Pseudoazurin from alcaligenes faecalis (space group P65)”. X-ray diffraction, 1 ligand (CU), 4 pockets (best druggability 0.50). MolNFT v1 #139045 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5X31
Type: protein
Length: 250 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pseudoazurin
UniProt: P04377
Ligands: CU
Pockets: 4 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Pseudoazurin	protein	125	18% helix, 38% strand	P04377

Ligands and binding sites

CU · Copper (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	125	0.50	0.80	21	empty
2	75	0.43	0.81	23	empty
3	89	0.42	0.79	21	empty
4	69	0.39	0.79	19	empty

Interfaces

1 interface between chains.

A–B · 315 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5X31 · Pseudoazurin from Alcaligenes faecalis (space group P65) · the same entry in another collection · chain A against A, TM-score 1.00
P04377 · AlphaFold monomer V2.0 prediction for pseudoazurin (P04377) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04377
Elsewhere: RCSB PDB 5X31 · PDBe 5X31 · UniProt P04377

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