MolNFT v1 · #139021 · protein
Crystal structure of dlc like domain of CSTAL3 (83-177AA)
5X2D · Tegumental protein 20.8 kda: “Crystal structure of dlc like domain of CSTAL3 (83-177AA)”. X-ray diffraction, 4 pockets (best druggability 0.61). MolNFT v1 #139021 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X2D
- Type
- protein
- Length
- 285 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tegumental protein 20.8 kda
- UniProt
- Q2PMV7
- Pockets
- 4 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Tegumental protein 20.8 kda | protein | 95 | 35% helix, 33% strand | Q2PMV7 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.61 | 0.81 | 22 | empty |
| 2 | 391 | 0.60 | 0.76 | 41 | empty |
| 3 | 129 | 0.40 | 0.75 | 23 | empty |
| 4 | 58 | 0.26 | 0.73 | 13 | empty |
Interfaces
3 interfaces between chains.
- A–C · 1100 Ų buried · 17 hydrogen bonds · protein-protein
- B–C · 509 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 133 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5X2D · Crystal structure of DLC like domain of CsTAL3 (83-177aa) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2PMV7
- Elsewhere: RCSB PDB 5X2D · PDBe 5X2D · UniProt Q2PMV7
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