MolNFT v1 · #138997 · protein
VANILLATE/3-O-methylgallate O-demethylase, ligm, protocatechuate- tetrahydrofolate complex form
5X1M: “VANILLATE/3-O-methylgallate O-demethylase, ligm, protocatechuate- tetrahydrofolate complex form”. X-ray diffraction, 1 ligand (DHB). MolNFT v1 #138997 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X1M
- Type
- protein
- Length
- 1,360 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- G2IQS7
- Ligands
- DHB
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 456 | — | G2IQS7 |
| B | — | protein | 448 | — | G2IQS7 |
| C | — | protein | 456 | — | G2IQS7 |
Ligands and binding sites
- DHB · 3,4-dihydroxybenzoic acid · ligand · 4 copies · chains A, B, C
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 4 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5X1M · Vanillate/3-O-methylgallate O-demethylase, LigM, protocatechuate-tetrahydrofolate complex… · the same entry in another collection · chain A against A, TM-score 1.00
- G2IQS7 · AlphaFold monomer V2.0 prediction for VANILLATE/3-O-methylgallate O-demethylase (G2IQS7) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G2IQS7
- Elsewhere: RCSB PDB 5X1M · PDBe 5X1M · UniProt G2IQS7
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