MolNFT v1 · #138988 · protein
Crystal structure of T246A-N247A human crmp-2 mutant
5X1D · Dihydropyrimidinase-related protein 2: “Crystal structure of T246A-N247A human crmp-2 mutant”. X-ray diffraction, 4 pockets (best druggability 0.65). MolNFT v1 #138988 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X1D
- Type
- protein
- Length
- 493 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dihydropyrimidinase-related protein 2
- UniProt
- Q16555
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dihydropyrimidinase-related protein 2 | protein | 493 | 34% helix, 23% strand | Q16555 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 227 | 0.65 | 0.83 | 36 | empty |
| 2 | 192 | 0.58 | 0.81 | 23 | empty |
| 3 | 61 | 0.37 | 0.79 | 17 | empty |
| 4 | 59 | 0.30 | 0.75 | 24 | empty |
Compared structures
- 5X1D · Crystal Structure of T246A-N247A Human CRMP-2 Mutant · the same entry in another collection · chain A against A, TM-score 1.00
- Q16555 · AlphaFold monomer V2.0 prediction for dihydropyrimidinase-related protein 2 (Q16555) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16555
- Elsewhere: RCSB PDB 5X1D · PDBe 5X1D · UniProt Q16555
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