MolNFT v1 · #138985 · protein

Crystal structure of human crmp-2

5X1A · Dihydropyrimidinase-related protein 2: “Crystal structure of human crmp-2”. X-ray diffraction, 3 pockets (best druggability 0.62). MolNFT v1 #138985 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5X1A
Type: protein
Length: 493 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dihydropyrimidinase-related protein 2
UniProt: Q16555
Pockets: 3 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dihydropyrimidinase-related protein 2	protein	493	35% helix, 23% strand	Q16555

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	229	0.62	0.81	33	empty
2	158	0.60	0.83	21	empty
3	55	0.27	0.74	18	empty

Compared structures

5X1A · Crystal Structure of Human CRMP-2 · the same entry in another collection · chain A against A, TM-score 1.00
Q16555 · AlphaFold monomer V2.0 prediction for dihydropyrimidinase-related protein 2 (Q16555) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q16555
Elsewhere: RCSB PDB 5X1A · PDBe 5X1A · UniProt Q16555

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