MolNFT v1 · #138952 · protein
12:0-acp thioesterase from umbellularia californica
5X04 · Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic: “12:0-acp thioesterase from umbellularia californica”. X-ray diffraction, 8 pockets (best druggability 0.83). MolNFT v1 #138952 on GenesisL1: 3D structure, binding sites…
- PDB
- 5X04
- Type
- protein
- Length
- 536 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic
- EC
- 3.1.2.21
- UniProt
- Q41635
- Pockets
- 8 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic (EC 3.1.2.21) | protein | 276 | 23% helix, 37% strand | Q41635 |
| B | Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic (EC 3.1.2.21) | protein | 260 | 22% helix, 41% strand | Q41635 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 387 | 0.83 | 0.92 | 42 | empty |
| 2 | 303 | 0.81 | 0.92 | 41 | empty |
| 3 | 155 | 0.73 | 0.90 | 29 | empty |
| 4 | 113 | 0.71 | 0.92 | 22 | empty |
| 5 | 75 | 0.59 | 0.89 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1600 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q41635
- Elsewhere: RCSB PDB 5X04 · PDBe 5X04 · UniProt Q41635
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.