MolNFT v1 · #138873 · protein + DNA
Crystal structure of ATERF96 with gcc-box
5WX9 · Ethylene-responsive transcription factor ERF096: “Crystal structure of ATERF96 with gcc-box”. X-ray diffraction, 7 pockets (best druggability 0.49). MolNFT v1 #138873 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WX9
- Type
- protein + DNA
- Length
- 153 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ethylene-responsive transcription factor ERF096; Gcc-box motif
- UniProt
- Q9LSX0
- Pockets
- 7 · best druggability 0.49
Structure
x-ray diffraction · 3 distinct chains · 30% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ethylene-responsive transcription factor ERF096 | protein | 131 | 30% helix, 11% strand | Q9LSX0 |
| B | Gcc-box motif | dna | 11 | — | — |
| C | Gcc-box motif | dna | 11 | — | — |
Pockets
7 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.49 | 0.87 | 16 | empty |
| 2 | 149 | 0.43 | 0.75 | 29 | empty |
| 3 | 76 | 0.43 | 0.80 | 14 | empty |
| 4 | 100 | 0.40 | 0.77 | 22 | empty |
| 5 | 60 | 0.39 | 0.81 | 15 | empty |
Interfaces
3 interfaces between chains.
- A–C · 865 Ų buried · 27 hydrogen bonds · protein-nucleic
- A–B · 614 Ų buried · 13 hydrogen bonds · protein-nucleic
- B–C · 473 Ų buried · 44 hydrogen bonds · nucleic-nucleic
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LSX0
- Elsewhere: RCSB PDB 5WX9 · PDBe 5WX9 · UniProt Q9LSX0
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