MolNFT v1 · #138872 · protein
Human herpesvirus 6A immediate early protein 2 C-terminal domain
5WX8 · Immediate-early protein 2: “Human herpesvirus 6A immediate early protein 2 C-terminal domain”. X-ray diffraction, 14 pockets (best druggability 0.74). MolNFT v1 #138872 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WX8
- Type
- protein
- Length
- 660 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Immediate-early protein 2
- UniProt
- Q77Z83
- Pockets
- 14 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Immediate-early protein 2 | protein | 165 | 45% helix, 20% strand | Q77Z83 |
Pockets
14 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 503 | 0.74 | 0.82 | 46 | empty |
| 2 | 227 | 0.53 | 0.77 | 24 | empty |
| 3 | 65 | 0.40 | 0.80 | 17 | empty |
| 4 | 54 | 0.40 | 0.81 | 17 | empty |
| 5 | 81 | 0.39 | 0.77 | 12 | empty |
Interfaces
5 interfaces between chains.
- C–D · 4236 Ų buried · 49 hydrogen bonds · protein-protein
- A–B · 4236 Ų buried · 50 hydrogen bonds · protein-protein
- A–D · 238 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 145 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 44 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 20 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 5WX8 · Human herpesvirus 6A immediate early protein 2 C-terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q77Z83
- Elsewhere: RCSB PDB 5WX8 · PDBe 5WX8 · UniProt Q77Z83
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