MolNFT v1 · #138804 · protein

Crystal structure of laminarinase from flavobacterium sp. umi-01

5WUT · ULAM111: “Crystal structure of laminarinase from flavobacterium sp. umi-01”. X-ray diffraction, 2 pockets (best druggability 0.59). MolNFT v1 #138804 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5WUT
Type: protein
Length: 460 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ULAM111
Pockets: 2 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	ULAM111	protein	230	7% helix, 47% strand	—

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	253	0.59	0.79	34	empty
2	289	0.59	0.78	37	empty

Interfaces

1 interface between chains.

A–B · 545 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5WUT · Crystal structure of laminarinase from Flavobacterium sp. UMI-01 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5WUT · PDBe 5WUT

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