MolNFT v1 · #138795 · protein
Crystal structure of flif-flig complex from H. pylori
5WUJ · Flagellar M-ring protein: “Crystal structure of flif-flig complex from H. pylori”. X-ray diffraction, 1 pocket (best druggability 0.31). MolNFT v1 #138795 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WUJ
- Type
- protein
- Length
- 142 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar M-ring protein; Flagellar motor switch protein flig
- UniProt
- O25118, O25119
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 2 distinct chains · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flagellar M-ring protein | protein | 37 | 89% helix, 0% strand | O25118 |
| B | Flagellar motor switch protein flig | protein | 105 | 79% helix, 0% strand | O25119 |
Ligands and binding sites
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.31 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1469 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 5WUJ · Crystal structure of FliF-FliG complex from H. pylori · the same entry in another collection · chain A against A, TM-score 1.00
- O25119 · AlphaFold monomer V2.0 prediction for flagellar motor switch protein flig (O25119) · a predicted model of the same protein · chain B against A, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O25118
- Every structure of UniProt O25119
- Elsewhere: RCSB PDB 5WUJ · PDBe 5WUJ · UniProt O25118 · UniProt O25119
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