MolNFT v1 · #138747 · protein

The crystal structure of SAV606

5WSX · Uncharacterized protein: “The crystal structure of SAV606”. X-ray diffraction, 3 pockets (best druggability 0.61). MolNFT v1 #138747 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5WSX
Type: protein
Length: 314 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q79ZR9
Pockets: 3 · best druggability 0.61

Structure

x-ray diffraction · 2 distinct chains · 27% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	162	26% helix, 39% strand	Q79ZR9
B	Uncharacterized protein	protein	152	28% helix, 41% strand	Q79ZR9

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	300	0.61	0.78	36	empty
2	228	0.59	0.80	41	empty
3	84	0.39	0.76	17	empty

Interfaces

1 interface between chains.

A–B · 1104 Å² buried · 23 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5WSX · The crystal structure of SAV606 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q79ZR9
Elsewhere: RCSB PDB 5WSX · PDBe 5WSX · UniProt Q79ZR9

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