MolNFT v1 · #138731 · protein

Crystal structure of a cupin protein (TM1459) in apo form

5WSD · Uncharacterized protein TM1459: “Crystal structure of a cupin protein (TM1459) in apo form”. X-ray diffraction, 3 pockets (best druggability 0.47). MolNFT v1 #138731 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5WSD
Type: protein
Length: 232 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein TM1459
UniProt: Q9X1H0
Pockets: 3 · best druggability 0.47

Structure

x-ray diffraction · 2 distinct chains · 5% helix, 60% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein TM1459	protein	118	5% helix, 61% strand	Q9X1H0
B	Uncharacterized protein TM1459	protein	114	5% helix, 60% strand	Q9X1H0

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	112	0.47	0.79	21	empty
2	124	0.44	0.77	24	empty
3	88	0.43	0.78	21	empty

Interfaces

1 interface between chains.

A–B · 1965 Å² buried · 23 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (oxidation).

Compared structures

5WSD · Crystal structure of a cupin protein (tm1459) in apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X1H0
Elsewhere: RCSB PDB 5WSD · PDBe 5WSD · UniProt Q9X1H0

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