MolNFT v1 · #138720 · protein + RNA
Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from methanolobus psychrophilus R15, complex with RNA
5WS2: “Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from methanolobus psychrophilus R15…”. X-ray diffraction, 2 ligands (ZN, SO4). MolNFT v1 #138720 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WS2
- Type
- protein + RNA
- Length
- 936 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- K4MAF9
- Ligands
- ZN, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 463 | — | K4MAF9 |
| B | — | protein | 463 | — | K4MAF9 |
| C, D | — | rna | 5 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, C, B, D
- SO4 · Sulfate ion · ion · 9 copies · chains A, B, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WS2 · Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus… · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K4MAF9
- Elsewhere: RCSB PDB 5WS2 · PDBe 5WS2 · UniProt K4MAF9
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