MolNFT v1 · #138606 · protein

1.65 ångström structure of the dynein light chain 1 from plasmodium falciparum

5WOF · Dynein light chain 1, putative: “1.65 ångström structure of the dynein light chain 1 from plasmodium falciparum”. X-ray diffraction, 1 pocket (best druggability 0.55). MolNFT v1 #138606 on GenesisL1: 3D structure, binding sites and…

PDB: 5WOF
Type: protein
Length: 254 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dynein light chain 1, putative
UniProt: Q8I5R9
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 2 distinct chains · 39% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dynein light chain 1, putative	protein	84	39% helix, 33% strand	Q8I5R9
B, C	Dynein light chain 1, putative	protein	85	39% helix, 28% strand	Q8I5R9

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	159	0.55	0.81	28	empty

Interfaces

3 interfaces between chains.

A–C · 1259 Å² buried · 24 hydrogen bonds · protein-protein
A–B · 436 Å² buried · 8 hydrogen bonds · protein-protein
B–C · 114 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

5WOF · 1.65 ångström structure of the dynein light chain 1 from plasmodium falciparum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8I5R9
Elsewhere: RCSB PDB 5WOF · PDBe 5WOF · UniProt Q8I5R9

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