MolNFT v1 · #138594 · protein
Chaperone spy bound to casein fragment (casein un-modeled)
5WO2 · Periplasmic chaperone spy: “Chaperone spy bound to casein fragment (casein un-modeled)”. X-ray diffraction, 2 ligands (ZN, CL), 1 pocket (best druggability 0.35). MolNFT v1 #138594 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5WO2
- Type
- protein
- Length
- 177 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic chaperone spy
- UniProt
- P77754
- Ligands
- ZN, CL
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 2 distinct chains · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic chaperone spy | protein | 88 | 74% helix, 0% strand | P77754 |
| B | Periplasmic chaperone spy | protein | 89 | 74% helix, 0% strand | P77754 |
Ligands and binding sites
- ZN · Zinc ion · metal · 16 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- IMD · Imidazole · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.35 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1713 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77754
- Elsewhere: RCSB PDB 5WO2 · PDBe 5WO2 · UniProt P77754
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